Stem-loop gma-MIR4415b

Accession

MI0018685

Description

Glycine max gma-MIR4415b precursor miRNA

Gene family

MIPF0001314; MIR4415

Literature search

1 open access papers mention gma-MIR4415b
(4 sentences)

Sequence

ggcugcaucAAGUUGUGAUGGGAAUCAAUGGCAgcaaucacgccaagaaaaugaaaucccauuaucuucucacaguauaucauuaauuaggcuaacugguguugacggauauaaauccauuacugccaUUGAUUCUCAUCACAACAUGGuccaguc
(((((.((((.(((((((((((((((((((((((...(((((((((((.((((......)))).)))......(((.((........)).)))...))))).))).((((....))))....))))))))))))))))))))))).)))).)))))

Structure

     c    A                       --------------caa   -     -----------------------------   a    aa 
ggcug aucA GUUGUGAUGGGAAUCAAUGGCAg                 uca cgcca                             aga aaug  a
||||| |||| |||||||||||||||||||||||                 ||| |||||                             ||| ||||   
cugac uGGU CAACACUACUCUUAGUUaccguc                 agu guggu                             ucu uuac  u
     c    A                       auuaccuaaauauaggc   u     caaucggauuaauuacuauaugacacucu   a    cc 

Annotation confidence Not enough data

Genome context

chr8: 23061554-23061709 [+]

Mature gma-miR4415b-3p

• Accession: MIMAT0021676
• Description: Glycine max gma-miR4415b-3p mature miRNA
• Sequence: 129 - UUGAUUCUCAUCACAACAUGG - 149
• Evidence: experimental ; Illumina [1]

Mature gma-miR4415b-5p

• Accession: MIMAT0022997
• Description: Glycine max gma-miR4415b-5p mature miRNA
• Sequence: 10 - AAGUUGUGAUGGGAAUCAAUGGCA - 33
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553