Stem-loop mtr-MIR168c

Accession

MI0019093

Description

Medicago truncatula mtr-MIR168c precursor miRNA

Gene family

MIPF0000081; MIR168

Literature search

5 open access papers mention mtr-MIR168c
(20 sentences)

Sequence

cucacuucgcggucucuaauUCGCUUGGUGCAGGUCGGGAAccacuacauccgcuguuuucguagaaaccggcggugaauuggauCCCGCCUUGCAUCAACUGAAUcggaggccgcggugaaucua
.((((..((((((((((.(((((.((((((((((.(((((.(((...((.((((((.((((...)))).))))))))...))).))))).)))))))))).))))).)))))))))))))).....

Structure

----c    uu          a     C          U     A   cua  u      u    g 
     ucac  cgcggucucu auUCG UUGGUGCAGG CGGGA cca   ca ccgcug uuuc  
     ||||  |||||||||| ||||| |||||||||| ||||| |||   || |||||| |||| u
     agug  gcgccggagg UAAGU AACUACGUUC GCCCu ggu   gu ggcggc aaag  
aucua    --          c     C          C     a   uaa  -      c    a 

Annotation confidence Not enough data

Genome context

chr5: 10278669-10278794 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR168c

Mature mtr-miR168c-5p

• Accession: MIMAT0022235
• Description: Medicago truncatula mtr-miR168c-5p mature miRNA
• Sequence: 21 - UCGCUUGGUGCAGGUCGGGAA - 41
• Evidence: experimental ; Illumina [1-2]

Mature mtr-miR168c-3p

• Accession: MIMAT0022236
• Description: Medicago truncatula mtr-miR168c-3p mature miRNA
• Sequence: 86 - CCCGCCUUGCAUCAACUGAAU - 106
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21762498
   Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
   Wang T, Chen L, Zhao M, Tian Q, Zhang WH
   BMC Genomics (2011) 12:367


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553