miRBase entry: mmu-mir-3544

Stem-loop mmu-mir-3544


Accession
MI0019179
Symbol
MGI: Mir3544
Description
Mus musculus mmu-mir-3544 precursor miRNA
Gene family
MIPF0001349; mir-3544

Literature search
1 open access papers mention mmu-mir-3544
(2 sentences)

Sequence

26753 reads, 24 reads per million, 90 experiments
AGAAAGGCAUCAUAUAGGAGCUGaauggcugugcaaucaACUCCUGCAUGACGCCGUUCCC
.(((.(((.((((.((((((.(((.((......)).))).)))))).)))).))).)))..

Structure
-A   A   A    A      C   a  gc 
  GAA GGC UCAU UAGGAG UGa ug  u
  ||| ||| |||| |||||| ||| ||   
  CUU CCG AGUA GUCCUC acu ac  g
CC   G   C    C      A   a  gu 


Annotation confidence Not enough data
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Genome context
chr12: 109585813-109585873 [-]
Clustered miRNAs
13 other miRNAs are < 10 kb from mmu-mir-3544
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-3544-5p

Accession MIMAT0022353
Description Mus musculus mmu-miR-3544-5p mature miRNA
Sequence 1 - AGAAAGGCAUCAUAUAGGAGCUG - 23
Evidence not_experimental
Database links
Predicted targets

Mature mmu-miR-3544-3p

Accession MIMAT0022354
Description Mus musculus mmu-miR-3544-3p mature miRNA
Sequence 40 - ACUCCUGCAUGACGCCGUUCCC - 61
Evidence not_experimental
Database links
Predicted targets

References

  1. PubMed ID: 21911355
    miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
    "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
    "Nucleic Acids Res (2012) 40:37-52