Stem-loop sly-MIR391

Accession

MI0019258

Description

Solanum lycopersicum sly-MIR391 precursor miRNA

Gene family

MIPF0001809; MIR4376

Literature search

1 open access papers mention sly-MIR391
(4 sentences)

Sequence

aaggcuugcuACGCAGGAGAGAUGAUGCUGGAcgauagagaaaaugggauuuaauuuauuggccagcaucauacuccugcauauuaagccu
.(((((((.((.(((((((..((((((((((.(((((((..((((...))))..))))))).)))))))))).))))))).)).)))))))

Structure

a       c  C       AG          A       ga    g 
 aggcuug uA GCAGGAG  AUGAUGCUGG cgauaga  aaau  
 ||||||| || |||||||  |||||||||| |||||||  |||| g
 uccgaau au cguccuc  uacuacgacc guuauuu  uuua  
-       u  a       -a          g       aa    g 

Annotation confidence Not enough data

Genome context

chr6: 4541880-4541970 [+]

Mature sly-miR391

• Accession: MIMAT0022688
• Description: Solanum lycopersicum sly-miR391 mature miRNA
• Sequence: 11 - ACGCAGGAGAGAUGAUGCUGGA - 32
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 18653800
   Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
   "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
   "Genome Res (2008) 18:1602-1609


2. PubMed ID: 18078843
   Small RNAs in tomato fruit and leaf development
   "Itaya A, Bundschuh R, Archual AJ, Joung JG, Fei Z, Dai X, Zhao PX, Tang Y, Nelson RS, Ding B"
   "Biochim Biophys Acta (2008) 1779:99-107


3. PubMed ID: 21917547
   Function and evolution of a MicroRNA that regulates a Ca2+-ATPase and triggers the formation of phased small interfering RNAs in tomato reproductive growth
   "Wang Y, Itaya A, Zhong X, Wu Y, Zhang J, van der Knaap E, Olmstead R, Qi Y, Ding B"
   "Plant Cell (2011) 23:3185-3203