Stem-loop gma-MIR5671a

Accession

MI0019265

Description

Glycine max gma-MIR5671a precursor miRNA

Literature search

1 open access papers mention gma-MIR5671a
(1 sentences)

Sequence

47270 reads, 1659.0 reads per million, 178 experiments

auugauucauCAUGGAAGUGAAUCGGGUGACucuuccauguugaucucuccuccaccaccuccuuaaggugauggcaaauuucugaguuuCCCGAAUUUGCUUCCAUGgugaaucaauc
(((((((((((((((((((((((((((.(((((.......(((.........(((.(((((.....))))).))))))......))))).)))).))))))))))))))))))))))).

Structure

-                       -    U     uuccaug   aucucuccu   c     c 
 auugauucauCAUGGAAGUGAAU CGGG GACuc       uug         cca caccu c
 ||||||||||||||||||||||| |||| |||||       |||         ||| ||||| u
 uaacuaagugGUACCUUCGUUUA GCCC uugag       aac         ggu gugga u
c                       A    u     -ucuuua   ---------   a     a 

Annotation confidence High

Genome context

chr11: 27953059-27953177 [-]

Mature gma-miR5671a-5p

• Accession: MIMAT0022453
• Description: Glycine max gma-miR5671a-5p mature miRNA
• Sequence: 11 - CAUGGAAGUGAAUCGGGUGAC - 31
• Evidence: experimental ; Illumina [1-2], RT-PCR [1]

Mature gma-miR5671a-3p

• Accession: MIMAT0054267
• Description: Glycine max gma-miR5671a-3p mature miRNA
• Sequence: 91 - CCCGAAUUUGCUUCCAUG - 108
• Evidence: experimental ; unknown

References

1. PubMed ID: 21219599
   Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing
   Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS
   BMC Plant Biol (2011) 11:5


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553