miRBase entry: gma-MIR4387e

Stem-loop gma-MIR4387e


Accession
MI0019276
Description
Glycine max gma-MIR4387e precursor miRNA
Gene family
MIPF0001109; MIR4387

Literature search
2 open access papers mention gma-MIR4387e
(2 sentences)

Sequence

acaaauggaguguuauauuaucacgccuaaucacugacgcaucauugucacaucauugaaggugaaggcgugacaaugaggUGUUAGUGAUAAGGCGUGAUGaugugauuuguuauaucauc
....((((...(((((((((((((((((.(((((((((((.((((((((((.((.((......)).)).)))))))))).))))))))))).)))))))))))))))))...))))......

Structure
--acaa    agu                 a           a          a  a  ga 
      augg   guuauauuaucacgccu aucacugacgc ucauugucac uc uu  a
      ||||   ||||||||||||||||| ||||||||||| |||||||||| || ||   
      uauu   uaguguaGUAGUGCGGA UAGUGAUUGUg aguaacagug gg ag  g
cuacua    guu                 A           g          c  a  ug 


Annotation confidence Not enough data
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Genome context
chr3: 23234500-23234621 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gma-MIR4387e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR4387e

Accession MIMAT0022464
Description Glycine max gma-miR4387e mature miRNA
Sequence 82 - UGUUAGUGAUAAGGCGUGAUG - 102
Evidence experimental
Illumina [1], RT-PCR [1]

References

  1. PubMed ID: 21219599
    Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing
    Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS
    BMC Plant Biol (2011) 11:5