Stem-loop bra-MIR5718

Accession

MI0019330

Description

Brassica rapa bra-MIR5718 precursor miRNA

Literature search

5 open access papers mention bra-MIR5718
(7 sentences)

Sequence

ugauuuauguuuuguugaucuuguucugguuugauuuugaacagcuuaguguugcucuguaauggaugcauaaccaguagauaugucaggauauuaaaaggaaccguuauuuugccucgugauagcgauguuccuucgaaucuucugacauaucuacugcuuaugccaccauuacagaacagcaacaagcuguUCAGAACCAAACACAGAACAAGaacagcggaacauaaaauc
...((((((((((((((.(((((((((((((((.(((((((((((((..(((((.((((((((((..((((((.(((((((((((((((((.(((..((((((((((((((.........)))))))..)))))))..))).))))))))))))))))).))))))..)))))))))).)))))..))))))))))))).))))).)))))))))).))))))))))))))...

Structure

uga              a          -     a             ag     c          au      c                 u   aa       --       uug 
   uuuauguuuuguug ucuuguucug guuug uuuugaacagcuu  uguug ucuguaaugg  gcauaa caguagauaugucagga auu  aaggaac  cguuauu   c
   |||||||||||||| |||||||||| ||||| |||||||||||||  ||||| ||||||||||  |||||| ||||||||||||||||| |||  |||||||  |||||||   c
   aaauacaaggcgac aGAACAAGAC CAAAC AAGACUugucgaa  acgac agacauuacc  cguauu gucaucuauacagucuu uaa  uuccuug  gcgauag   u
cua              a          A     C             ca     a          ac      c                 c   gc       ua       ugc 

Annotation confidence Not enough data

Genome context

chrA9: 4446439-4446672 [+]

Mature bra-miR5718

• Accession: MIMAT0023016
• Description: Brassica rapa bra-miR5718 mature miRNA
• Sequence: 194 - UCAGAACCAAACACAGAACAAG - 215
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22025521
   Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa
   "Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y"
   "J Exp Bot (2012) 63:1025-1038


2. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146