Stem-loop bra-MIR1140

Accession

MI0019335

Description

Brassica rapa bra-MIR1140 precursor miRNA

Gene family

MIPF0001568; MIR1140

Literature search

1 open access papers mention bra-MIR1140
(2 sentences)

Sequence

uccccuguucucucaaucuuuuauauggcuccgauuggcuuuaggcuguuguggcuuugacuucuuucuaaagucuucaaaauuuaguuuuucacaaucacguuaaauuuuuuuaaaagucacagccacaACAGCCUAAACCAAUCGGAGCcauggugaugaguucuuguaaggg
..((((.....((((.((.....(((((((((((((((.(((((((((((((((((.((((((....(((((..........)))))...............(((((....))))))))))).))))))))))))))))))))))))))))))))..))))))........))))

Structure

uc    ---guucu    a  uuuua               c                 u      -------------------------cuuu     gucu 
  cccu        cuca uc     uauggcuccgauugg uuuaggcuguuguggcu ugacuu                             cuaaa    u
  ||||        |||| ||     ||||||||||||||| ||||||||||||||||| ||||||                             |||||     
  ggga        gagu ag     guacCGAGGCUAACC AAAUCCGACAacaccga acugaa                             gauuu    c
--    auguucuu    -  ---ug               -                 c      aauuuuuuuaaauugcacuaacacuuuuu     aaaa 

Annotation confidence Not enough data

Genome context

chrA3: 683631-683805 [+]

Mature bra-miR1140

• Accession: MIMAT0023021
• Description: Brassica rapa bra-miR1140 mature miRNA
• Sequence: 131 - ACAGCCUAAACCAAUCGGAGC - 151
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22025521
   Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa
   "Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y"
   "J Exp Bot (2012) 63:1025-1038


2. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146