miRBase entry: ola-mir-133-3

Stem-loop ola-mir-133-3

Accession

MI0019553

Description

Oryzias latipes ola-mir-133-3 precursor miRNA

Gene family

MIPF0000029; mir-133

Literature search

2 open access papers mention ola-mir-133-3
(2 sentences)

Sequence

gaagcaacucgccuugcuguggcuggucaaacggaaccaagucagguguuucagagagguuUGGUCCCCUUCAACCAGCuacugcgucgugaaucauauc
........((((..(((.(((((((((..((.((.((((((((..............)))))))).)).))..))))))))).)))..))))........

Structure

gaagcaac    cu   u         ca  c  a        aggugu 
        ucgc  ugc guggcuggu  aa gg accaaguc      u
        ||||  ||| |||||||||  || || ||||||||       
        agug  gcg cauCGACCA  UU CC UGGUuugg      u
cuauacua    cu   u         AC  C  C        agagac

Annotation confidence Not enough data

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Genome context

24: 13641851-13641950 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-133-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ola-miR-133-3p

Accession	MIMAT0022560
Description	Oryzias latipes ola-miR-133-3p mature miRNA
Sequence	62 - UGGUCCCCUUCAACCAGC - 79
Evidence	experimental SOLiD [1]

References

PubMed ID: 21143817
Discovery and characterization of medaka miRNA genes by next generation sequencing platform
Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
BMC Genomics (2010) 11:S8