Stem-loop cgr-let-7d

Accession

MI0020371

Description

Cricetulus griseus cgr-let-7d precursor miRNA

Gene family

MIPF0000002; let-7

Sequence

379434 reads, 5253 reads per million, 6 experiments

gcuccuaggaAGAGGUAGUAGGUUGCAUAGUUuuagggcagggauuuugcccacaaggagguaaCUAUACGACCUGCUGCCUUUCUuagggccuu
((.(((((((.((((((((((((((.((((((...((((((.....))))))..........)))))).)))))))))))))))))))))))...

Structure

---  u       A              C      -------uua      g 
   gc ccuagga GAGGUAGUAGGUUG AUAGUU          gggcag g
   || ||||||| |||||||||||||| ||||||          |||||| a
   cg ggauUCU UUCCGUCGUCCAGC UAUCaa          cccguu u
uuc  -       -              A      uggaggaaca      u 

Annotation confidence Not enough data

Genome context

JH000030.1: 3829137-3829231 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cgr-let-7d

Mature cgr-let-7d-5p

• Accession: MIMAT0023719
• Description: Cricetulus griseus cgr-let-7d-5p mature miRNA
• Sequence: 11 - AGAGGUAGUAGGUUGCAUAGUU - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-let-7d-3p

• Accession: MIMAT0023720
• Description: Cricetulus griseus cgr-let-7d-3p mature miRNA
• Sequence: 65 - CUAUACGACCUGCUGCCUUUCU - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75