Stem-loop cgr-mir-10b

Accession

MI0020382

Description

Cricetulus griseus cgr-mir-10b precursor miRNA

Gene family

MIPF0000033; mir-10

Literature search

1 open access papers mention cgr-mir-10b
(1 sentences)

Sequence

1609636 reads, 22333 reads per million, 6 experiments

ugucuauauaUACCCUGUAGAACCGAAUUUGUgugguacccacauagucACAGAUUCGAUUCUAGGGGAAUauauggucg
.(.((((((((.((((.(((((.(((((((((((((...))))......))))))))).))))))))).)))))))).).

Structure

u u        A    G     C         ------    u 
 g cuauauaU CCCU UAGAA CGAAUUUGU      gugg  
 | |||||||| |||| ||||| |||||||||      |||| a
 c gguauaUA GGGG AUCUU GCUUAGACA      cacc  
g u        A    -     A         cugaua    c 

Annotation confidence High

Genome context

JH000109.1: 1421205-1421284 [-]

Mature cgr-miR-10b-5p

• Accession: MIMAT0023737
• Description: Cricetulus griseus cgr-miR-10b-5p mature miRNA
• Sequence: 11 - UACCCUGUAGAACCGAAUUUGU - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-10b-3p

• Accession: MIMAT0023738
• Description: Cricetulus griseus cgr-miR-10b-3p mature miRNA
• Sequence: 50 - ACAGAUUCGAUUCUAGGGGAAU - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75