Stem-loop cgr-mir-125b

Accession

MI0020386

Description

Cricetulus griseus cgr-mir-125b precursor miRNA

Gene family

MIPF0000033; mir-10

Literature search

1 open access papers mention cgr-mir-125b
(1 sentences)

Sequence

1873851 reads, 26059 reads per million, 6 experiments

cuuuuccuagUCCCUGAGACCCUAACUUGUGAgggauuuuaguaacaUCACAAGUCAGGCUCUUGGGACcuaggcgga
.....(((((((((.((((.(((.(((((((((..((....))..).)))))))).))).)))))))).)))))....

Structure

cuuuu     -    U    C   A        - gg  u 
     ccuag UCCC GAGA CCU ACUUGUGA g  au u
     ||||| |||| |||| ||| |||||||| |  ||  
     ggauc AGGG UUCU GGA UGAACACU c  ug u
-aggc     C    -    C   C        a aa  a 

Annotation confidence High

Genome context

JH000146.1: 89052-89129 [-]

Mature cgr-miR-125b-5p

• Accession: MIMAT0023743
• Description: Cricetulus griseus cgr-miR-125b-5p mature miRNA
• Sequence: 11 - UCCCUGAGACCCUAACUUGUGA - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-125b-3p

• Accession: MIMAT0023744
• Description: Cricetulus griseus cgr-miR-125b-3p mature miRNA
• Sequence: 48 - UCACAAGUCAGGCUCUUGGGAC - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75