Stem-loop cgr-mir-1285

Accession

MI0020390

Description

Cricetulus griseus cgr-mir-1285 precursor miRNA

Sequence

6223 reads, 73 reads per million, 6 experiments

ggucagaacuccugugcugaucaguaaguagugggauggugucugugcauagcuacUGCACUCCAGCCUGGGCAACAUAGugagaccucg
((((...(((((((.((((...(((..(((((((....((((....))))..)))))))))).)))).))))......)))..))))...

Structure

---    aga   ------    u    auc   aa       gaug    c 
   gguc   acu      ccug gcug   agu  guagugg    gugu u
   ||||   |||      |||| ||||   |||  |||||||    ||||  
   ccag   uGA      GGGU CGAC   UCA  CGUcauc    uacg g
gcu    -ag   UACAAC    C    --C   --       --ga    u 

Annotation confidence Low

Genome context

JH000291.1: 615931-616020 [+]

Mature cgr-miR-1285

• Accession: MIMAT0023748
• Description: Cricetulus griseus cgr-miR-1285 mature miRNA
• Sequence: 57 - UGCACUCCAGCCUGGGCAACAUAG - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75