Stem-loop cgr-mir-130a

Accession

MI0020394

Description

Cricetulus griseus cgr-mir-130a precursor miRNA

Gene family

MIPF0000034; mir-130

Sequence

82473 reads, 1123 reads per million, 6 experiments

gcuggccggaGCUCUUUUCACAUUGUGCUACUgucuucaccuauaacgagCAGUGCAAUGUUAAAAGGGCAUcggccuugu
...((((((.((((((((.((((((((((.((................)).)))))))))).)))))))).))))))....

Structure

-gcu      a        C          A  gucuuca 
    ggccgg GCUCUUUU ACAUUGUGCU CU       c
    |||||| |||||||| |||||||||| ||        
    ccggcU CGGGAAAA UGUAACGUGA ga       c
uguu      A        U          C  gcaauau 

Annotation confidence Low

Genome context

JH000637.1: 459670-459750 [-]

Mature cgr-miR-130a-5p

• Accession: MIMAT0023754
• Description: Cricetulus griseus cgr-miR-130a-5p mature miRNA
• Sequence: 11 - GCUCUUUUCACAUUGUGCUACU - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-130a-3p

• Accession: MIMAT0023755
• Description: Cricetulus griseus cgr-miR-130a-3p mature miRNA
• Sequence: 51 - CAGUGCAAUGUUAAAAGGGCAU - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75