Stem-loop cgr-mir-140

Accession

MI0020402

Description

Cricetulus griseus cgr-mir-140 precursor miRNA

Gene family

MIPF0000085; mir-140

Sequence

681583 reads, 9494 reads per million, 6 experiments

guguccugcCAGUGGUUUUACCCUAUGGUAGguuacgucaugcuguucuACCACAGGGUAGAACCACGGACaggauaccgg
((((((((((.(((((((((((((.(((((((.((.((...)))).))))))).))))))))))))))).))))))))...

Structure

---        -  A             A       u  c  c 
   guguccug cC GUGGUUUUACCCU UGGUAGg ua gu  
   |||||||| || ||||||||||||| ||||||| || || a
   cauaggaC GG CACCAAGAUGGGA ACCAucu gu cg  
ggc        A  -             C       u  -  u 

Annotation confidence High

Genome context

JH000993.1: 542169-542249 [+]

Mature cgr-miR-140-5p

• Accession: MIMAT0023767
• Description: Cricetulus griseus cgr-miR-140-5p mature miRNA
• Sequence: 10 - CAGUGGUUUUACCCUAUGGUAG - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-140-3p

• Accession: MIMAT0023768
• Description: Cricetulus griseus cgr-miR-140-3p mature miRNA
• Sequence: 50 - ACCACAGGGUAGAACCACGGAC - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75