miRBase entry: cgr-mir-141

Stem-loop cgr-mir-141


Accession
MI0020403
Description
Cricetulus griseus cgr-mir-141 precursor miRNA
Gene family
MIPF0000019; mir-8


Sequence

4281 reads, 50 reads per million, 6 experiments
gacuggcuuuggguccaucuuccagugcaguguuggaugguugaaguaugaagcuccUAACACUGUCUGGUAAAGAUGGCccccggguca
...((((((.(((.(((((((((((.((((((((((..(.((........)).)..))))))))))))))..))))))).))).))))))

Structure
gac      u   u       --    u          au g  gaa 
   uggcuu ggg ccaucuu  ccag gcaguguugg  g uu   g
   |||||| ||| |||||||  |||| ||||||||||  | ||    
   acuggg ccc GGUAGAA  GGUC UGUCACAAUc  c aa   u
---      c   C       AU    -          cu g  gua 


Annotation confidence Low
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Genome context
JH000031.1: 4002691-4002780 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cgr-mir-141
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-141

Accession MIMAT0023769
Description Cricetulus griseus cgr-miR-141 mature miRNA
Sequence 58 - UAACACUGUCUGGUAAAGAUGGC - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75