Stem-loop cgr-mir-146b

Accession

MI0020408

Description

Cricetulus griseus cgr-mir-146b precursor miRNA

Gene family

MIPF0000103; mir-146

Sequence

254790 reads, 3546 reads per million, 6 experiments

accuggcucUGAGAACUGAAUUCCAUAGGCUGugagcucuagcaaauGCCCUAGGGACUCAGUUCUGGUgcccgguugu
(((.(((.((.((((((((.((((.((((.(((..((....))..))).)))))))).)))))))))).))).)))...

Structure

---   u   u  G        A    A    C   ga  u 
   acc ggc cU AGAACUGA UUCC UAGG UGu  gc c
   ||| ||| || |||||||| |||| |||| |||  ||  
   ugg ccg GG UCUUGACU AGGG AUCC Gua  cg u
ugu   c   U  -        C    -    C   aa  a 

Annotation confidence Not enough data

Genome context

JH000895.1: 588891-588969 [+]

Mature cgr-miR-146b-5p

• Accession: MIMAT0023775
• Description: Cricetulus griseus cgr-miR-146b-5p mature miRNA
• Sequence: 10 - UGAGAACUGAAUUCCAUAGGCUG - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-146b-3p

• Accession: MIMAT0023776
• Description: Cricetulus griseus cgr-miR-146b-3p mature miRNA
• Sequence: 48 - GCCCUAGGGACUCAGUUCUGGU - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75