Stem-loop cgr-mir-148b

Accession

MI0020410

Description

Cricetulus griseus cgr-mir-148b precursor miRNA

Gene family

MIPF0000056; mir-148

Sequence

89030 reads, 1261 reads per million, 6 experiments

auuugagguGAAGUUCUGUUAUACACUCAGGCuguggcucugaaagUCAGUGCAUCACAGAACUUUGUcucgaaagcu
.((((((((((((((((((.((.(((((((((....)).))))......))).)).))))))))))))))))))....

Structure

---a                  U  A   ------    -  u 
    uuugagguGAAGUUCUGU AU CAC      UCAG GC g
    |||||||||||||||||| || |||      |||| ||  
    aagcucUGUUUCAAGACA UA GUG      aguc cg u
ucga                  C  C   ACUgaa    u  g 

Annotation confidence High

Genome context

JH001354.1: 427-504 [+]

Mature cgr-miR-148b-5p

• Accession: MIMAT0023778
• Description: Cricetulus griseus cgr-miR-148b-5p mature miRNA
• Sequence: 10 - GAAGUUCUGUUAUACACUCAGGC - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-148b-3p

• Accession: MIMAT0023779
• Description: Cricetulus griseus cgr-miR-148b-3p mature miRNA
• Sequence: 47 - UCAGUGCAUCACAGAACUUUGU - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75