Stem-loop cgr-mir-154

Accession

MI0020414

Description

Cricetulus griseus cgr-mir-154 precursor miRNA

Gene family

MIPF0000018; mir-154

Sequence

3346 reads, 21 reads per million, 6 experiments

gcuugaagaUAGGUUAUCCGUGUUGCCUUCGcuuuauucaugacgAAUCAUACACGGUUGACCUAUUuuucaguacc
(((.((((((((((((.((((((....(((((.........).))))....)))))).)))))))))))).)))...

Structure

---   u            U      UGCC    - uuu 
   gcu gaagaUAGGUUA CCGUGU    UUCG c   a
   ||| |||||||||||| ||||||    |||| |   u
   uga uuuUUAUCCAGU GGCACA    AAgc g   u
cca   c            U      UACU    a uac 

Annotation confidence Low

Genome context

JH000884.1: 68436-68512 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from cgr-mir-154

Mature cgr-miR-154-5p

• Accession: MIMAT0023786
• Description: Cricetulus griseus cgr-miR-154-5p mature miRNA
• Sequence: 10 - UAGGUUAUCCGUGUUGCCUUCG - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-154-3p

• Accession: MIMAT0023787
• Description: Cricetulus griseus cgr-miR-154-3p mature miRNA
• Sequence: 46 - AAUCAUACACGGUUGACCUAUU - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75