Stem-loop cgr-mir-181c

Accession

MI0020422

Description

Cricetulus griseus cgr-mir-181c precursor miRNA

Gene family

MIPF0000007; mir-181

Sequence

19830 reads, 281 reads per million, 6 experiments

guuugggggAACAUUCAACCUGUCGGUGAGUuugggcagcucagacaaACCAUCGACCGUUGAGUGGACCccgaggccug
((((.((((..((((((((..(((((((.(((((...........)))))))))))).))))))))..)))).))))...

Structure

---    g    AA        CU       A     ggca 
   guuu gggg  CAUUCAAC  GUCGGUG GUuug    g
   |||| ||||  ||||||||  ||||||| |||||    c
   cgga ccCC  GUGAGUUG  CAGCUAC CAaac    u
guc    g    AG        -C       -     agac 

Annotation confidence Not enough data

Genome context

JH000286.1: 1109008-1109087 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-181c

Mature cgr-miR-181c-5p

• Accession: MIMAT0023801
• Description: Cricetulus griseus cgr-miR-181c-5p mature miRNA
• Sequence: 10 - AACAUUCAACCUGUCGGUGAGU - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-181c-3p

• Accession: MIMAT0023802
• Description: Cricetulus griseus cgr-miR-181c-3p mature miRNA
• Sequence: 49 - ACCAUCGACCGUUGAGUGGACC - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75