Stem-loop cgr-mir-181d

Accession

MI0020423

Description

Cricetulus griseus cgr-mir-181d precursor miRNA

Gene family

MIPF0000007; mir-181

Sequence

50411 reads, 745 reads per million, 6 experiments

gucacaaucAACAUUCAUUGUUGUCGGUGGGUugugaugaggaggccagaCCCACCGGGGGAUGAAUGUCAcuguggcugg
((((((....(((((((((....((((((((((...............))))))))))..)))))))))...))))))...

Structure

---      aucA         GUUG          gugaug 
   gucaca    ACAUUCAUU    UCGGUGGGUu      a
   ||||||    |||||||||    ||||||||||      g
   cggugu    UGUAAGUAG    GGCCACCCag      g
ggu      -cAC         --GG          accgga 

Annotation confidence Low

Genome context

JH000286.1: 1109186-1109266 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-181d

Mature cgr-miR-181d-5p

• Accession: MIMAT0023803
• Description: Cricetulus griseus cgr-miR-181d-5p mature miRNA
• Sequence: 10 - AACAUUCAUUGUUGUCGGUGGGU - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-181d-3p

• Accession: MIMAT0023804
• Description: Cricetulus griseus cgr-miR-181d-3p mature miRNA
• Sequence: 51 - CCCACCGGGGGAUGAAUGUCA - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75