Stem-loop cgr-mir-18a

Accession

MI0020433

Description

Cricetulus griseus cgr-mir-18a precursor miRNA

Gene family

MIPF0000001; mir-17

Literature search

1 open access papers mention cgr-mir-18a
(1 sentences)

Sequence

29258 reads, 385 reads per million, 6 experiments

gugcugagugcuuuuuguucUAAGGUGCAUCUAGUGCAGAUAGugaaguagacuagcaucuACUGCCCUAAGUGCUCCUUCUGGcauaagaaguuaugucguc
....(((..(((((((((.((((((.((((.(((.((((.(((((...........)).))))))).))).)))).)))..))).)))))))))....)))..

Structure

gugc   --gu         u   --   U    C   U    A   -  aagu 
    uga    gcuuuuugu cUA  AGG GCAU UAG GCAG UAG ug    a
    |||    ||||||||| |||  ||| |||| ||| |||| ||| ||    g
    gcu    ugaagaaua GGU  UCC CGUG AUC CGUC Auc ac    a
--cu   guau         c   CU   U    A   C    -   u  gauc 

Annotation confidence High

Genome context

JH001979.1: 109537-109639 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cgr-mir-18a

Mature cgr-miR-18a-5p

• Accession: MIMAT0023817
• Description: Cricetulus griseus cgr-miR-18a-5p mature miRNA
• Sequence: 21 - UAAGGUGCAUCUAGUGCAGAUAG - 43
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-18a-3p

• Accession: MIMAT0023818
• Description: Cricetulus griseus cgr-miR-18a-3p mature miRNA
• Sequence: 62 - ACUGCCCUAAGUGCUCCUUCUGG - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75