Stem-loop cgr-mir-193b

Accession

MI0020439

Description

Cricetulus griseus cgr-mir-193b precursor miRNA

Gene family

MIPF0000082; mir-193

Sequence

6489 reads, 71 reads per million, 6 experiments

gcccagaauCGGGGUUUUGAGGGCGAGAUGAguuuguguuuuauccAACUGGCCCACAAAGUCCCGCUuuugggguca
.(((((((.((((((((((.((((.((.((.((.........)).)).)).)))).)))))))))).)))))))....

Structure

---g       u          A    G  A  A  uug 
    cccagaa CGGGGUUUUG GGGC AG UG gu   u
    ||||||| |||||||||| |||| || || ||   g
    ggguuuU GCCCUGAAAC CCCG UC Ac ua   u
acug       C          A    G  A  c  uuu 

Annotation confidence Low

Genome context

JH000052.1: 3322770-3322847 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-193b

Mature cgr-miR-193b-5p

• Accession: MIMAT0023825
• Description: Cricetulus griseus cgr-miR-193b-5p mature miRNA
• Sequence: 10 - CGGGGUUUUGAGGGCGAGAUGA - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-193b-3p

• Accession: MIMAT0023826
• Description: Cricetulus griseus cgr-miR-193b-3p mature miRNA
• Sequence: 47 - AACUGGCCCACAAAGUCCCGCU - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75