Stem-loop cgr-mir-28

Accession

MI0020475

Description

Cricetulus griseus cgr-mir-28 precursor miRNA

Gene family

MIPF0000057; mir-28

Literature search

1 open access papers mention cgr-mir-28
(2 sentences)

Sequence

172039 reads, 2319 reads per million, 6 experiments

cccuacccucAAGGAGCUCACAGUCUAUUGAguugccuuucugauucuccCACUAGAUUGUGAGCUCCUGGAgggcaggca
.(((.(((((.((((((((((((((((..(((((........)))))......)))))))))))))))).))))).)))..

Structure

-c   a     A                ----UU     gcc 
  ccu cccuc AGGAGCUCACAGUCUA      GAguu   u
  ||| ||||| ||||||||||||||||      |||||    
  gga gggAG UCCUCGAGUGUUAGAU      cuuag   u
ac   c     G                CACccu     ucu 

Annotation confidence High

Genome context

JH000017.1: 3563425-3563505 [-]

Mature cgr-miR-28-5p

• Accession: MIMAT0023878
• Description: Cricetulus griseus cgr-miR-28-5p mature miRNA
• Sequence: 11 - AAGGAGCUCACAGUCUAUUGA - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-28-3p

• Accession: MIMAT0023879
• Description: Cricetulus griseus cgr-miR-28-3p mature miRNA
• Sequence: 51 - CACUAGAUUGUGAGCUCCUGGA - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75