Stem-loop cgr-mir-29b

Accession

MI0020479

Description

Cricetulus griseus cgr-mir-29b precursor miRNA

Gene family

MIPF0000009; mir-29

Sequence

29980 reads, 402 reads per million, 6 experiments

ccuucaggaaGCUGGUUUCAUAUGGUGGUUUAGAuuuaaauagugauugucUAGCACCAUUUGAAAUCAGUGUUcuuggugga
((.(((((((((((((((((.((((((..((((((.............)))))))))))).)))))))))).))))))).)).

Structure

-  u       -          U      GU      uuaaa 
 cc ucaggaa GCUGGUUUCA AUGGUG  UUAGAu     u
 || ||||||| |||||||||| ||||||  ||||||     a
 gg gguucUU UGACUAAAGU UACCAC  GAUcug     g
a  u       G          U      --      uuagu 

Annotation confidence High

Genome context

JH005876.1: 8713-8795 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-29b

Mature cgr-miR-29b-5p

• Accession: MIMAT0023885
• Description: Cricetulus griseus cgr-miR-29b-5p mature miRNA
• Sequence: 11 - GCUGGUUUCAUAUGGUGGUUUAGA - 34
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-29b-3p

• Accession: MIMAT0023886
• Description: Cricetulus griseus cgr-miR-29b-3p mature miRNA
• Sequence: 52 - UAGCACCAUUUGAAAUCAGUGUU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75