Stem-loop cgr-mir-30b

Accession

MI0020485

Description

Cricetulus griseus cgr-mir-30b precursor miRNA

Gene family

MIPF0000005; mir-30

Literature search

1 open access papers mention cgr-mir-30b
(4 sentences)

Sequence

13518 reads, 192 reads per million, 6 experiments

guucaguucaUGUAAACAUCCUACACUCAGCUgucauacaugaguuggCUGGGAUGUGGAUGUUUACGUCagcugucuu
...(((((.((((((((((((.((((((((((.(((....)))...))))))).))))))))))))))).)))))....

Structure

-guu     c            U   -       --g   u 
    caguu aUGUAAACAUCC ACA CUCAGCU   uca a
    ||||| |||||||||||| ||| |||||||   |||  
    gucga UGCAUUUGUAGG UGU GGGUCgg   agu c
uucu     C            -   A       uug   a 

Annotation confidence High

Genome context

JH020411.1: 249-327 [-]

Mature cgr-miR-30b-5p

• Accession: MIMAT0023896
• Description: Cricetulus griseus cgr-miR-30b-5p mature miRNA
• Sequence: 11 - UGUAAACAUCCUACACUCAGCU - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-30b-3p

• Accession: MIMAT0023897
• Description: Cricetulus griseus cgr-miR-30b-3p mature miRNA
• Sequence: 49 - CUGGGAUGUGGAUGUUUACGUC - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75