Stem-loop cgr-mir-30e

Accession

MI0020488

Description

Cricetulus griseus cgr-mir-30e precursor miRNA

Gene family

MIPF0000005; mir-30

Literature search

2 open access papers mention cgr-mir-30e
(6 sentences)

Sequence

345168 reads, 4775 reads per million, 6 experiments

cuuugcuacUGUAAACAUCCUUGACUGGAAGCuguaagguguugagaagagCUUUCAGUCGGAUGUUUACAGCggcaggcugc
.((((((.((((((((((((..(((((((((((................))))))))))))))))))))))).))))))....

Structure

---c      a            UU           guaaggu 
    uuugcu cUGUAAACAUCC  GACUGGAAGCu       g
    |||||| ||||||||||||  |||||||||||        
    ggacgg GACAUUUGUAGG  CUGACUUUCga       u
cguc      C            --           gaagagu 

Annotation confidence High

Genome context

JH000283.1: 438667-438749 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-30e

Mature cgr-miR-30e-5p

• Accession: MIMAT0023900
• Description: Cricetulus griseus cgr-miR-30e-5p mature miRNA
• Sequence: 10 - UGUAAACAUCCUUGACUGGAAGC - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-30e-3p

• Accession: MIMAT0023901
• Description: Cricetulus griseus cgr-miR-30e-3p mature miRNA
• Sequence: 52 - CUUUCAGUCGGAUGUUUACAGC - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75