Stem-loop cgr-mir-342

Accession

MI0020502

Description

Cricetulus griseus cgr-mir-342 precursor miRNA

Gene family

MIPF0000190; mir-342

Sequence

9174 reads, 111 reads per million, 6 experiments

cucaaggugAGGGGUGCUAUCUGUGAUUGAGGggcauggucaauggaauugUCUCACACAGAAAUCGCACCCGUCaccuuggccu
.(((((((((.((((((..((((((..(((((.((((.....)))....).)))))))))))....)))))).)))))))))...

Structure

--c         G      --UA      AU     g ----   g 
   ucaaggugA GGGUGC    UCUGUG  UGAGG g    cau g
   ||||||||| ||||||    ||||||  ||||| |    ||| u
   gguuccaCU CCCACG    AGACAC  ACUCU u    gua c
ucc         G      CUAA      --     g uaag   a 

Annotation confidence Low

Genome context

JH000414.1: 950950-951034 [+]

Mature cgr-miR-342-5p

• Accession: MIMAT0023922
• Description: Cricetulus griseus cgr-miR-342-5p mature miRNA
• Sequence: 10 - AGGGGUGCUAUCUGUGAUUGAGG - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-342-3p

• Accession: MIMAT0023923
• Description: Cricetulus griseus cgr-miR-342-3p mature miRNA
• Sequence: 52 - UCUCACACAGAAAUCGCACCCGUC - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75