Stem-loop cgr-mir-409

Accession

MI0020520

Description

Cricetulus griseus cgr-mir-409 precursor miRNA

Gene family

MIPF0000018; mir-154

Literature search

1 open access papers mention cgr-mir-409
(2 sentences)

Sequence

13128 reads, 177 reads per million, 6 experiments

cucggagagAGGUUACCCGAGCAACUUUGCAUCuggaggacGAAUGUUGCUCGGUGAACCCCUuuucgguauc
.((((((((.((((..((((((((((((((........).)))).)))))))))..)))).))))))))....

Structure

---c        A    AC         -    - AUC 
    ucggagag GGUU  CCGAGCAAC UUUG C   u
    |||||||| ||||  ||||||||| |||| |    
    ggcuuuUC CCAA  GGCUCGUUG AAGc g   g
cuau        C    GU         U    a gag 

Annotation confidence Low

Genome context

JH000884.1: 73057-73129 [+]

Clustered miRNAs

8 other miRNAs are < 10 kb from cgr-mir-409

Mature cgr-miR-409-5p

• Accession: MIMAT0023950
• Description: Cricetulus griseus cgr-miR-409-5p mature miRNA
• Sequence: 10 - AGGUUACCCGAGCAACUUUGCAUC - 33
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-409-3p

• Accession: MIMAT0023951
• Description: Cricetulus griseus cgr-miR-409-3p mature miRNA
• Sequence: 42 - GAAUGUUGCUCGGUGAACCCCU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75