Stem-loop cgr-mir-872

Accession

MI0020557

Description

Cricetulus griseus cgr-mir-872 precursor miRNA

Gene family

MIPF0000399; mir-872

Sequence

291189 reads, 4027 reads per million, 6 experiments

gacuugucagAAGGUUACUUGUUAGUUCAGGaccucauuacuuucugccUGAACUAUUGCAGUAGCCUCCuaacugguu
((((.((.((.((((((((.(((((((((((................)))))))))..)))))))))).)).)).))))

Structure

    u  c  A        U  --         accucau 
gacu gu ag AGGUUACU GU  UAGUUCAGG       u
|||| || || |||||||| ||  |||||||||        
uugg ca uC UCCGAUGA CG  AUCAAGUcc       a
    u  a  C        -  UU         gucuuuc 

Annotation confidence High

Genome context

JH000371.1: 424956-425034 [-]

Mature cgr-miR-872-5p

• Accession: MIMAT0024005
• Description: Cricetulus griseus cgr-miR-872-5p mature miRNA
• Sequence: 11 - AAGGUUACUUGUUAGUUCAGG - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-872-3p

• Accession: MIMAT0024006
• Description: Cricetulus griseus cgr-miR-872-3p mature miRNA
• Sequence: 50 - UGAACUAUUGCAGUAGCCUCC - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75