Stem-loop sequence mes-MIR159a

Accession

MI0020959 (change log)

Description

Manihot esculenta miR159a stem-loop

Gene family

MIPF0000010; MIR159

Literature search

7 open access papers mention mes-MIR159a
(23 sentences)

Stem-loop

              ga       ua        u  ----u      auu     g     c    g uc      c      u  uaaua     u 
5' uggagcuccuu  aguccaa  gaggaucu gc     ggguag   gagcu cugag uaug a  ccacag ccuauc ca     aagac u
   |||||||||||  |||||||  |||||||| ||     ||||||   ||||| ||||| |||| |  |||||| |||||| ||     |||||  
3' aucucgaggga  uuagguu  uuccuaga ug     uccauu   uucga gacuc auac u  gguguu ggauag gu     uucug u
              ag       ug        u  uauuc      -ac     g     u    g uc      c      -  ---uc     a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Cassava4): scaffold03525: 998-1178 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0020959

Mature sequence mes-miR159a-5p

• Accession: MIMAT0037459
• Sequence: 45 - agcugcugagcuauggauccc - 65
• Evidence: experimental; Illumina [2]

Mature sequence mes-miR159a-3p

• Accession: MIMAT0024410
• Sequence: 161 - uuuggauugaagggagcucua - 181
• Evidence: not experimental

References

1. "Overview of the potential of microRNAs and their target gene detection for cassava (Manihot esculenta) improvement" Amiteye S, Corral JM, Sharbel TF African J Biotech. 10:(2011).
2. PMID:26822616 "High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs" Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN BMC Genomics. 17:85(2016).