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High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs |
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|---|---|
| PubMed ID | 26822616 |
| Authors | Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN |
| Journal | BMC Genomics |
| Volume | 17 |
| Pages | 85 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| mes-MIR159a | MI0020959 | None | scaffold03525 | 998 | 1178 | - | - |
| mes-MIR171a | MI0020964 | None | scaffold05214 | 128472 | 128603 | - | - |
| mes-MIR156k | MI0024217 | None | scaffold02421 | 988565 | 988654 | + | - |
| mes-MIR160f | MI0024226 | None | scaffold02255 | 67959 | 68054 | + | - |
| mes-MIR166j | MI0024243 | None | scaffold02895 | 16886 | 16982 | - | - |
| mes-MIR167b | MI0024244 | None | scaffold11998 | 665663 | 665764 | - | - |
| mes-MIR169ac | MI0024279 | None | scaffold01701 | 436630 | 436768 | + | - |
| mes-MIR171e | MI0024283 | None | scaffold11970 | 74033 | 74131 | + | - |
| mes-MIR319f | MI0024300 | None | scaffold06446 | 168758 | 168933 | - | - |
| mes-MIR393a | MI0024304 | None | scaffold12439 | 276547 | 276651 | - | - |
| mes-MIR530b | MI0024341 | None | scaffold04182 | 393762 | 393931 | + | - |
| mes-MIR171l | MI0037904 | None | scaffold07330 | 183561 | 183688 | + | - |
| mes-MIR390b | MI0037905 | None | scaffold01061 | 102509 | 102642 | - | - |
| mes-MIR397b | MI0037906 | None | scaffold09000 | 647747 | 647876 | - | - |
| mes-MIR398 | MI0037907 | None | scaffold07991 | 99841 | 99978 | + | - |
| mes-MIR399h | MI0037908 | None | scaffold11425 | 529448 | 529551 | + | - |
| mes-MIR477j | MI0037909 | None | scaffold03581 | 762703 | 762817 | - | - |
| mes-MIR477k | MI0037910 | None | scaffold06716 | 23178 | 23352 | + | - |
| mes-MIR2118 | MI0037911 | None | scaffold08359 | 1293624 | 1293743 | + | - |
| mes-MIR482b | MI0037912 | None | scaffold04043 | 391302 | 391458 | - | - |
| mes-MIR482c | MI0037913 | None | scaffold03604 | 533085 | 533214 | - | - |
| mes-MIR482d | MI0037914 | None | scaffold03604 | 533334 | 533446 | - | - |
| mes-MIR482e | MI0037915 | None | scaffold03363 | 631489 | 631613 | + | - |
| mes-MIR535c | MI0037916 | None | scaffold05782 | 12520 | 12652 | - | - |
| mes-MIR535d | MI0037917 | None | scaffold01190 | 159468 | 159600 | - | - |
| mes-MIR1446b | MI0037918 | None | scaffold01701 | 706488 | 706623 | + | - |
| mes-MIR3627 | MI0037919 | None | scaffold03418 | 2111 | 2194 | + | - |
| mes-MIR6445 | MI0037920 | None | scaffold12794 | 1892122 | 1892261 | - | - |
| mes-MIR9386 | MI0037921 | None | scaffold02373 | 78611 | 78735 | - | - |
| mes-MIR169ad | MI0037922 | None | scaffold05005 | 24104 | 24252 | + | - |
| mes-MIR11891 | MI0037923 | None | scaffold01045 | 30015 | 30179 | + | - |
| mes-MIR11892 | MI0037924 | None | scaffold09889 | 5902 | 6005 | - | - |
| mes-MIR167a | MI0020962 | None | scaffold12065 | 33218 | 33472 | + | - |
| mes-MIR156a | MI0024207 | None | scaffold10493 | 934623 | 934718 | - | - |
| mes-MIR156b | MI0024208 | None | scaffold09822 | 156961 | 157044 | - | - |
| mes-MIR156c | MI0024209 | None | scaffold07859 | 647750 | 647835 | - | - |
| mes-MIR156d | MI0024210 | None | scaffold07318 | 232145 | 232230 | - | - |
| mes-MIR156e | MI0024211 | None | scaffold03049 | 344166 | 344255 | + | - |
| mes-MIR156f | MI0024212 | None | scaffold00847 | 1929084 | 1929173 | + | - |
| mes-MIR156g | MI0024213 | None | scaffold00206 | 357293 | 357380 | + | - |
| mes-MIR156h | MI0024214 | None | scaffold12711 | 213693 | 213777 | - | - |
| mes-MIR156i | MI0024215 | None | scaffold08935 | 29237 | 29322 | + | - |
| mes-MIR156j | MI0024216 | None | scaffold06871 | 276857 | 276940 | - | - |
| mes-MIR160a | MI0024221 | None | scaffold10183 | 164216 | 164301 | - | - |
| mes-MIR160b | MI0024222 | None | scaffold02954 | 10603 | 10687 | + | - |
| mes-MIR160c | MI0024223 | None | scaffold08404 | 8406 | 8499 | - | - |
| mes-MIR160d | MI0024224 | None | scaffold00271 | 120302 | 120387 | - | - |
| mes-MIR160e | MI0024225 | None | scaffold04163 | 47842 | 47929 | - | - |
| mes-MIR160g | MI0024227 | None | scaffold02960 | 648590 | 648675 | - | - |
| mes-MIR160h | MI0024228 | None | scaffold12004 | 855175 | 855260 | + | - |
| mes-MIR166a | MI0024234 | None | scaffold11998 | 298832 | 298923 | + | - |
| mes-MIR166b | MI0024235 | None | scaffold10563 | 539461 | 539557 | - | - |
| mes-MIR166c | MI0024236 | None | scaffold07330 | 39223 | 39299 | - | - |
| mes-MIR166d | MI0024237 | None | scaffold03581 | 311203 | 311312 | - | - |
| mes-MIR166e | MI0024238 | None | scaffold01551 | 925753 | 925848 | + | - |
| mes-MIR166f | MI0024239 | None | scaffold00977 | 63690 | 63830 | + | - |
| mes-MIR166g | MI0024240 | None | scaffold00872 | 85496 | 85620 | - | - |
| mes-MIR166h | MI0024241 | None | scaffold05979 | 357827 | 357971 | + | - |
| mes-MIR166i | MI0024242 | None | scaffold05979 | 357653 | 357772 | + | - |
| mes-MIR167c | MI0024245 | None | scaffold11998 | 669702 | 669809 | - | - |
| mes-MIR167d | MI0024246 | None | scaffold09347 | 45566 | 45653 | - | - |
| mes-MIR167e | MI0024247 | None | scaffold03802 | 653294 | 653419 | - | - |
| mes-MIR167f | MI0024248 | None | scaffold03614 | 2928186 | 2928311 | - | - |
| mes-MIR167g | MI0024249 | None | scaffold10563 | 253654 | 253721 | + | - |
| mes-MIR167h | MI0024250 | None | scaffold01551 | 1197211 | 1197280 | - | - |
| mes-MIR169a | MI0024251 | None | scaffold12448 | 44913 | 45002 | - | - |
| mes-MIR169b | MI0024252 | None | scaffold11581 | 1504070 | 1504176 | + | - |
| mes-MIR169c | MI0024253 | None | scaffold11341 | 672352 | 672448 | + | - |
| mes-MIR169d | MI0024254 | None | scaffold03874 | 50917 | 51013 | + | - |
| mes-MIR169e | MI0024255 | None | scaffold03049 | 886480 | 886576 | - | - |
| mes-MIR169f | MI0024256 | None | scaffold04233 | 350206 | 350308 | - | - |
| mes-MIR169g | MI0024257 | None | scaffold06582 | 708959 | 709043 | - | - |
| mes-MIR169h | MI0024258 | None | scaffold03264 | 411990 | 412084 | + | - |
| mes-MIR169i | MI0024259 | None | scaffold12768 | 29476 | 29559 | - | - |
| mes-MIR169j | MI0024260 | None | scaffold12768 | 42242 | 42326 | - | - |
| mes-MIR169k | MI0024261 | None | scaffold12448 | 20120 | 20206 | - | - |
| mes-MIR169l | MI0024262 | None | scaffold11232 | 311795 | 311877 | - | - |
| mes-MIR169m | MI0024263 | None | scaffold11232 | 343197 | 343289 | + | - |
| mes-MIR169n | MI0024264 | None | scaffold02017 | 31157 | 31241 | - | - |
| mes-MIR169o | MI0024265 | None | scaffold08757 | 173499 | 173625 | - | - |
| mes-MIR169p | MI0024266 | None | scaffold05005 | 2236 | 2331 | + | - |
| mes-MIR169q | MI0024267 | None | scaffold05005 | 6485 | 6593 | - | - |
| mes-MIR169r | MI0024268 | None | scaffold05005 | 6216 | 6310 | - | - |
| mes-MIR169s | MI0024269 | None | scaffold05005 | 11750 | 11840 | + | - |
| mes-MIR169t | MI0024270 | None | scaffold05005 | 7537 | 7640 | + | - |
| mes-MIR169u | MI0024271 | None | scaffold05005 | 20259 | 20360 | + | - |
| mes-MIR169v | MI0024272 | None | scaffold05005 | 24359 | 24464 | + | - |
| mes-MIR169w | MI0024273 | None | scaffold05005 | 23286 | 23394 | - | - |
| mes-MIR169x | MI0024274 | None | scaffold03800 | 17695 | 17789 | - | - |
| mes-MIR169y | MI0024275 | None | scaffold03800 | 17965 | 18073 | - | - |
| mes-MIR169z | MI0024276 | None | scaffold05005 | 23017 | 23111 | - | - |
| mes-MIR169aa | MI0024277 | None | scaffold00363 | 71664 | 71779 | - | - |
| mes-MIR169ab | MI0024278 | None | scaffold09876 | 536550 | 536677 | + | - |
| mes-MIR171b | MI0024280 | None | scaffold06598 | 144796 | 144885 | - | - |
| mes-MIR171c | MI0024281 | None | scaffold02717 | 36349 | 36432 | - | - |
| mes-MIR171d | MI0024282 | None | scaffold07330 | 183574 | 183676 | - | - |
| mes-MIR171f | MI0024284 | None | scaffold05760 | 38935 | 39031 | + | - |
| mes-MIR171g | MI0024285 | None | scaffold09876 | 304317 | 304402 | + | - |
| mes-MIR171h | MI0024286 | None | scaffold09683 | 88279 | 88391 | - | - |
| mes-MIR171i | MI0024287 | None | scaffold07520 | 2504286 | 2504423 | + | - |
| mes-MIR171j | MI0024288 | None | scaffold06512 | 1322382 | 1322513 | + | - |
| mes-MIR171k | MI0024289 | None | scaffold01701 | 155454 | 155543 | + | - |
| mes-MIR390 | MI0024303 | None | scaffold05375 | 104124 | 104260 | - | - |
| mes-MIR393b | MI0024305 | None | scaffold08265 | 2433536 | 2433645 | + | - |
| mes-MIR393c | MI0024306 | None | scaffold11425 | 152114 | 152249 | + | - |
| mes-MIR393d | MI0024307 | None | scaffold00341 | 615432 | 615573 | + | - |
| mes-MIR395a | MI0024310 | None | scaffold11495 | 409809 | 409881 | - | - |
| mes-MIR395b | MI0024311 | None | scaffold11495 | 417324 | 417391 | + | - |
| mes-MIR395c | MI0024312 | None | scaffold07690 | 1450 | 1551 | + | - |
| mes-MIR395d | MI0024313 | None | scaffold01497 | 23497 | 23599 | + | - |
| mes-MIR395e | MI0024314 | None | scaffold00080 | 382438 | 382588 | - | - |
| mes-MIR477h | MI0024330 | None | scaffold08265 | 457959 | 458101 | - | - |
| mes-MIR477i | MI0024331 | None | scaffold06716 | 23382 | 23488 | + | - |
| mes-MIR477a | MI0024332 | None | scaffold06716 | 23691 | 23769 | + | - |
| mes-MIR477b | MI0024333 | None | scaffold03175 | 114424 | 114573 | + | - |
| mes-MIR477c | MI0024334 | None | scaffold03175 | 114710 | 114884 | + | - |
| mes-MIR477d | MI0024335 | None | scaffold02226 | 32017 | 32178 | + | - |
| mes-MIR477e | MI0024336 | None | scaffold02226 | 32349 | 32453 | + | - |
| mes-MIR477f | MI0024337 | None | scaffold04043 | 624312 | 624420 | - | - |
| mes-MIR477g | MI0024338 | None | scaffold01701 | 705026 | 705165 | + | - |
| mes-MIR482 | MI0024339 | None | scaffold02264 | 510283 | 510413 | + | - |
| mes-MIR535a | MI0024342 | None | scaffold05782 | 22903 | 23015 | - | - |
| mes-MIR535b | MI0024343 | None | scaffold01190 | 166527 | 166640 | - | - |
| mes-MIR828a | MI0024345 | None | scaffold06377 | 35055 | 35221 | - | - |
| mes-MIR828b | MI0024346 | None | scaffold03581 | 479735 | 479908 | - | - |