miRBase entry: mes-MIR482d

Stem-loop mes-MIR482d

Accession

MI0037914

Description

Manihot esculenta mes-MIR482d precursor miRNA

Literature search

1 open access papers mention mes-MIR482d
(1 sentences)

Sequence

agagagugcuagaggaaguuaauggagauggguggcucgggaagaagaaaaagaggccuagucuucUUCCCGACACCACCCAUUCCAUccacuuccuccaacuucucucuuuc
((((((.....((((((((..((((((.(((((((.((((((((((((...((....))..))))))))))))..)))))))))))))..))))))))......))))))...

Structure

---      -ugcua        ua      a       -c            aaa  a 
   agagag      gaggaagu  auggag ugggugg  ucgggaagaaga   ag g
   ||||||      ||||||||  |||||| |||||||  ||||||||||||   ||  
   ucucuc      cuccuuca  UACCUU ACCCACC  AGCCCUUcuucu   uc g
cuu      uucaac        cc      -       AC            -ga  c

Annotation confidence Not enough data

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Genome context

scaffold03604: 533334-533446 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mes-MIR482d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mes-miR482d

Accession	MIMAT0045978
Description	Manihot esculenta mes-miR482d mature miRNA
Sequence	67 - UUCCCGACACCACCCAUUCCAU - 88
Evidence	experimental Illumina [1]

References

PubMed ID: 26822616
High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
BMC Genomics (2016) 17:85