Stem-loop mes-MIR159a

Accession

MI0020959

Description

Manihot esculenta mes-MIR159a precursor miRNA

Literature search

7 open access papers mention mes-MIR159a
(23 sentences)

Sequence

uggagcuccuugaaguccaauagaggaucuugcuggguagauugAGCUGCUGAGCUAUGGAUCCCacagcccuaucucauaauaaagacuuuagucuucuuggauaggcuuguggcuugcauaucucaggagcuucauuaccucuuauguuagauccuugUUUGGAUUGAAGGGAGCUCUA
(((((((((((..(((((((..((((((((.((.((((((...(((((.(((((.((((.(..((((((.((((((.((.....(((((....)))))..)))))))).))))))..).)))).))))).)))))..)))))).....)).))))))))..)))))))..)))))))))))

Structure

           ga       ua        u  ----u      auu     G     C    G UC      c      u  uaaua     u 
uggagcuccuu  aguccaa  gaggaucu gc     ggguag   gAGCU CUGAG UAUG A  CCacag ccuauc ca     aagac u
|||||||||||  |||||||  |||||||| ||     ||||||   ||||| ||||| |||| |  |||||| |||||| ||     |||||  
AUCUCGAGGGA  UUAGGUU  uuccuaga ug     uccauu   uucga gacuc auac u  gguguu ggauag gu     uucug u
           AG       Ug        u  uauuc      -ac     g     u    g uc      c      -  ---uc     a 

Annotation confidence Not enough data

Genome context

scaffold03525: 998-1178 [-]

Mature mes-miR159a-3p

• Accession: MIMAT0024410
• Description: Manihot esculenta mes-miR159a-3p mature miRNA
• Sequence: 161 - UUUGGAUUGAAGGGAGCUCUA - 181
• Evidence: not_experimental

Mature mes-miR159a-5p

• Accession: MIMAT0037459
• Description: Manihot esculenta mes-miR159a-5p mature miRNA
• Sequence: 45 - AGCUGCUGAGCUAUGGAUCCC - 65
• Evidence: experimental ; Illumina [2]

References

1. Overview of the potential of microRNAs and their target gene detection for cassava (Manihot esculenta) improvement
   "Amiteye S, Corral JM, Sharbel TF"
   African J Biotech. (2011) 10:2562-2573


2. PubMed ID: 26822616
   High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
   Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
   BMC Genomics (2016) 17:85