Stem-loop mes-MIR399h

Accession

MI0037908

Description

Manihot esculenta mes-MIR399h precursor miRNA

Literature search

7 open access papers mention mes-MIR399h
(10 sentences)

Sequence

agcaguuguaGGGCACCUCUCGCUUGGCAGGcaauggcagcaugagaagguguuagaauucgacccuguugucuugccaaaggagagcugcccugugauugcuu
(((((((((((((((.(((((..((((((((((((((.(((((......)))))...........)))))).))))))))..))))).))))))))))))))).

Structure

-               C     GC        -      ----------c     ga 
 agcaguuguaGGGCA CUCUC  UUGGCAGG caaugg           agcau  g
 ||||||||||||||| |||||  |||||||| ||||||           |||||   
 ucguuagugucccgu gagag  aaccguuc guuguc           uugug  a
u               c     ga        u      ccagcuuaaga     ga 

Annotation confidence Not enough data

Genome context

scaffold11425: 529448-529551 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mes-MIR399h

Mature mes-miR399h

• Accession: MIMAT0045972
• Description: Manihot esculenta mes-miR399h mature miRNA
• Sequence: 11 - GGGCACCUCUCGCUUGGCAGG - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26822616
   High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
   Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
   BMC Genomics (2016) 17:85