Stem-loop mes-MIR319f

Accession

MI0024300

Description

Manihot esculenta mes-MIR319f precursor miRNA

Literature search

7 open access papers mention mes-MIR319f
(24 sentences)

Sequence

ugggagcuccuuucaguccaauacggagggcugaucgcagcaagagcugccaucucaugcaccauggcaauacuugacauuaaagaaauguuaaaauguuaaguuuggccaagugcauggugugggagcaacuccuucugugcuucgcucacccAUUGGACUGAAGGGAGCUCCuu
.(((((((((((((((((((((..((.((((.((.(((((.(((.(((.((((.((((((((..((((...((((((((((.............))))))))))...)))).)))))))).)))).))).....)))))))).)).)))).)).))))))))))))))))))))).

Structure

u                     ac  a    u  u     c   ----a   g    c        ca    aau          aaaga 
 gggagcuccuuucaguccaau  gg gggc ga cgcag aag     gcu ccau ucaugcac  uggc   acuugacauu     a
 |||||||||||||||||||||  || |||| || ||||| |||     ||| |||| ||||||||  ||||   ||||||||||     a
 uCCUCGAGGGAAGUCAGGUUA  cc cucg uu guguc uuc     cga ggug gguacgug  accg   ugaauuguaa     u
u                     -c  a    c  c     -   cucaa   g    u        -a    guu          aauug 

Annotation confidence Not enough data

Genome context

scaffold06446: 168758-168933 [-]

Mature mes-miR319f

• Accession: MIMAT0029258
• Description: Manihot esculenta mes-miR319f mature miRNA
• Sequence: 155 - AUUGGACUGAAGGGAGCUCC - 174
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269


2. PubMed ID: 26822616
   High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
   Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
   BMC Genomics (2016) 17:85