Stem-loop mes-MIR171l

Accession

MI0037904

Description

Manihot esculenta mes-MIR171l precursor miRNA

Literature search

7 open access papers mention mes-MIR171l
(16 sentences)

Sequence

gaaguagacacggcgugauauuggcacggcucaucuucuacuggaucuuccauaacuagccaggauccauuucuugauaaaaugaagaagaagacgaCGAGCCGAACCAAUAUCACUCuuguaugcuu
.(((((.(((.((.((((((((((..((((((.((.(((..((((((((............)))))))).(((((.((...)).)))))..))).)).))))))..)))))))))).))))).)))))

Structure

g     g   c  c          ca      a  u   --------------------ac        ccaua 
 aagua aca gg gugauauugg  cggcuc uc ucu                      uggaucuu     a
 ||||| ||| || ||||||||||  |||||| || |||                      ||||||||      
 uucgu ugu uC CACUAUAACC  GCCGAG ag aga                      accuagga     c
-     a   -  U          AA      C  c   agaagaaguaaaauaguucuuu        ccgau 

Annotation confidence Not enough data

Genome context

scaffold07330: 183561-183688 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mes-MIR171l

Mature mes-miR171l

• Accession: MIMAT0045968
• Description: Manihot esculenta mes-miR171l mature miRNA
• Sequence: 98 - CGAGCCGAACCAAUAUCACUC - 118
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26822616
   High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
   Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
   BMC Genomics (2016) 17:85