Stem-loop mes-MIR171e

Accession

MI0024283

Description

Manihot esculenta mes-MIR171e precursor miRNA

Literature search

7 open access papers mention mes-MIR171e
(17 sentences)

Sequence

aggaaagcgauauuggugagguucaauccgaugacggauuuacacauugaguauuguaaaagacgaucucagaUUGAGCCGCGCCAAUAUCACUuucuu
.((((((.((((((((((.(((((((((.((.((((..(((..(((........))).)))..)).)))).))))))))).)))))))))).)))))).

Structure

a      c          a         c  u  -  ga   ac   uug 
 ggaaag gauauuggug gguucaauc ga ga cg  uuu  aca   a
 |||||| |||||||||| ||||||||| || || ||  |||  |||    
 ucuuUC CUAUAACCGC CCGAGUUag cu cu gc  aaa  ugu   g
u      A          G         a  -  a  ag   -a   uau 

Annotation confidence Not enough data

Genome context

scaffold11970: 74033-74131 [+]

Mature mes-miR171e

• Accession: MIMAT0029241
• Description: Manihot esculenta mes-miR171e mature miRNA
• Sequence: 74 - UUGAGCCGCGCCAAUAUCACU - 94
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269


2. PubMed ID: 26822616
   High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
   Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
   BMC Genomics (2016) 17:85