Stem-loop mes-MIR1446b

Accession

MI0037918

Description

Manihot esculenta mes-MIR1446b precursor miRNA

Literature search

1 open access papers mention mes-MIR1446b
(2 sentences)

Sequence

ggauuuuuggagaucuaacuuucucUGAACUCUCCCCCUCAACGGCUacucuagcuucucucaaauuucaagcguuuuggcguacuuagcaguugaggugaggaguucagcaaaaguuggcucucguguaauuaug
.((((....((((.((((((((..(((((((((.(.(((((((.((((.....(((......................))).....)))).))))))).).)))))))))..)))))))).))))....))))...

Structure

--g    uuug    u        cu         C C       G    cucua   ucucucaaau 
   gauu    gaga cuaacuuu  cUGAACUCU C CCUCAAC GCUa     gcu          u
   ||||    |||| ||||||||  ||||||||| | ||||||| ||||     |||           
   uuaa    cucu gguugaaa  gacuugagg g ggaguug cgau     cgg          u
gua    ugug    c        ac         a u       a    ucaug   uuuugcgaac 

Annotation confidence Not enough data

Genome context

scaffold01701: 706488-706623 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mes-MIR1446b

Mature mes-miR1446b

• Accession: MIMAT0045982
• Description: Manihot esculenta mes-miR1446b mature miRNA
• Sequence: 26 - UGAACUCUCCCCCUCAACGGCU - 47
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26822616
   High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
   Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
   BMC Genomics (2016) 17:85