Stem-loop mes-MIR169u

Accession

MI0024271

Description

Manihot esculenta mes-MIR169u precursor miRNA

Literature search

10 open access papers mention mes-MIR169u
(28 sentences)

Sequence

UAGCCAAGGAUGACUUGCCUGcuccugcuccugcucauacuaggguugcugguauacaagugcagcccuugaguguagguuucaggcagucaccuuggcuaa
(((((((((.(((((.(((((..(((((....(((((....((((((((............))))))))))))))))))...))))))))))))))))))).

Structure

-         A     U     -cu     uccu     uacu        uggua 
 UAGCCAAGG UGACU GCCUG   ccugc    gcuca    aggguugc     u
 ||||||||| ||||| |||||   |||||    |||||    ||||||||      
 aucgguucc acuga cggac   ggaug    ugagu    ucccgacg     a
a         -     -     uuu     ----     ----        ugaac 

Annotation confidence Not enough data

Genome context

scaffold05005: 20259-20360 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from mes-MIR169u

Mature mes-miR169u

• Accession: MIMAT0029229
• Description: Manihot esculenta mes-miR169u mature miRNA
• Sequence: 1 - UAGCCAAGGAUGACUUGCCUG - 21
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269