Stem-loop mes-MIR169s

Accession

MI0024269

Description

Manihot esculenta mes-MIR169s precursor miRNA

Literature search

10 open access papers mention mes-MIR169s
(28 sentences)

Sequence

UAGCCAAGGAUGACUUGCCUGcuccauacuaggguugcugguauacaagugcagcccucgagaguagguuucaggcagucaccuuggcuaa
(((((((((.(((((.(((((..((.((((((((((((............))))))))....))))))...))))))))))))))))))).

Structure

-         A     U     -cu  a    ----        uggua 
 UAGCCAAGG UGACU GCCUG   cc uacu    aggguugc     u
 ||||||||| ||||| |||||   || ||||    ||||||||      
 aucgguucc acuga cggac   gg auga    ucccgacg     a
a         -     -     uuu  -    gagc        ugaac 

Annotation confidence Not enough data

Genome context

scaffold05005: 11750-11840 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from mes-MIR169s

Mature mes-miR169s

• Accession: MIMAT0029227
• Description: Manihot esculenta mes-miR169s mature miRNA
• Sequence: 1 - UAGCCAAGGAUGACUUGCCUG - 21
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269