Stem-loop mes-MIR828a

Accession

MI0024345

Description

Manihot esculenta mes-MIR828a precursor miRNA

Literature search

3 open access papers mention mes-MIR828a
(6 sentences)

Sequence

ccuccuuguaauguuUCUUGCUCAAAUGAGUAUUCCAaucacaguugcauuuugcauacacaaucuccuuugcuuuucuuucaguaucuccacuguaaauuuugugguugcugaugcugcugugucucugagaugcucauuugagcaaguaauguuauaaugggagg
(((((((((((((((.((((((((((((((((((.((..((((((.(((((..(((..(((((.....(((((.....................)))))..)))))..))).))))).))))))....)).)))))))))))))))))).)))))))))..))))))

Structure

      --         U                  C  --au      u     uu   ua     ucucc     uuuucuuuc 
ccuccu  uguaauguu CUUGCUCAAAUGAGUAUU CA    cacagu gcauu  gca  cacaa     uuugc         a
||||||  ||||||||| |||||||||||||||||| ||    |||||| |||||  |||  |||||     |||||         g
ggaggg  auauuguaa gaacgaguuuacucguag gu    gugucg cguag  cgu  guguu     aaaug         u
      ua         u                  a  cucu      u     -u   ug     ---uu     ucaccucua 

Annotation confidence Not enough data

Genome context

scaffold06377: 35055-35221 [-]

Mature mes-miR828a

• Accession: MIMAT0029303
• Description: Manihot esculenta mes-miR828a mature miRNA
• Sequence: 16 - UCUUGCUCAAAUGAGUAUUCCA - 37
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269