Stem-loop mes-MIR167b

Accession

MI0024244

Description

Manihot esculenta mes-MIR167b precursor miRNA

Literature search

5 open access papers mention mes-MIR167b
(21 sentences)

Sequence

ccacuagcaguUGAAGCUGCCAGCAUGAUCUaaacuuccuuuucuuuauaaucugcaucaaaaggaaagaucagaucaugugguagcuucaccuguugaugg
(((.((((((.(((((((((((.((((((((...(((((((((................)))))).)))...))))))))))))))))))).)))))).)))

Structure

   c      u           G        aaa   -      cuuuaua 
cca uagcag UGAAGCUGCCA CAUGAUCU   cuu ccuuuu       a
||| |||||| ||||||||||| ||||||||   ||| ||||||        
ggu guuguc acuucgauggu guacuaga   gaa ggaaaa       u
   a      c           -        cua   a      cuacguc 

Annotation confidence Not enough data

Genome context

scaffold11998: 665663-665764 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mes-MIR167b

Mature mes-miR167b

• Accession: MIMAT0029202
• Description: Manihot esculenta mes-miR167b mature miRNA
• Sequence: 12 - UGAAGCUGCCAGCAUGAUCU - 31
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269


2. PubMed ID: 26822616
   High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
   Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
   BMC Genomics (2016) 17:85