Stem-loop mes-MIR156k

Accession

MI0024217

Description

Manihot esculenta mes-MIR156k precursor miRNA

Literature search

6 open access papers mention mes-MIR156k
(25 sentences)

Sequence

ugUUGACAGAAGAGAGAGAGCACaacccgccauuggcugaagagagucuuuacuuuuguugggagugugcucucccgucuucugucauca
((.(((((((((((.(((((((((.((((.((..((.((((((...))))))))..)).))))..))))))))).).)))))))))).))

Structure

  U          - A         -a    c  uu  c      g 
ug UGACAGAAGA G GAGAGCACa  cccg ca  gg ugaaga  
|| |||||||||| | |||||||||  |||| ||  || |||||| a
ac acugucuucu c cucucgugu  gggu gu  uc auuucu  
  u          g c         ga    u  uu  -      g 

Annotation confidence Not enough data

Genome context

scaffold02421: 988565-988654 [+]

Mature mes-miR156k

• Accession: MIMAT0029175
• Description: Manihot esculenta mes-miR156k mature miRNA
• Sequence: 3 - UUGACAGAAGAGAGAGAGCAC - 23
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269


2. PubMed ID: 26822616
   High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
   Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
   BMC Genomics (2016) 17:85