Stem-loop mes-MIR390b

Accession

MI0037905

Description

Manihot esculenta mes-MIR390b precursor miRNA

Literature search

2 open access papers mention mes-MIR390b
(11 sentences)

Sequence

agacucuguaAAGCUCAGGAGGGAUAGCGCCauaagcaaugauaaugguuauugauuuuuggguuaaucuacaaaaaaaaaaaaaaaaaaaaauacauuaauggcgcuaucuauccugaguuucacagguucuu
(((.(((((.((((((((((.((((((((((((...(((((((....))))))).((((((..........)))))).......................)))))))))))).)))))))))).))))).))).

Structure

-   c     a          G            -------------------------------------------aag       a 
 aga ucugu AAGCUCAGGA GGAUAGCGCCau                                              caaugau a
 ||| ||||| |||||||||| ||||||||||||                                              |||||||  
 ucu ggaca uuugaguccu ucuaucgcggua                                              guuauug u
u   u     c          a            auuacauaaaaaaaaaaaaaaaaaaaaacaucuaauuggguuuuua       g 

Annotation confidence Not enough data

Genome context

scaffold01061: 102509-102642 [-]

Mature mes-miR390b

• Accession: MIMAT0045969
• Description: Manihot esculenta mes-miR390b mature miRNA
• Sequence: 11 - AAGCUCAGGAGGGAUAGCGCC - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26822616
   High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
   Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
   BMC Genomics (2016) 17:85