Stem-loop mes-MIR535d

Accession

MI0037917

Description

Manihot esculenta mes-MIR535d precursor miRNA

Literature search

4 open access papers mention mes-MIR535d
(9 sentences)

Sequence

guucccuuaguguugacauaauuggUUGACGACGAGAGAGAGCACGcauguuagcauucaugcugugaucaugguugucuacaagugugcucccuaccgucgucaugcaauaugcucaaauaacguuugugcu
............((((((((.(((..((((((((..((.((((((((.(((..(((.(((((.......))))).)))..))).)))))))).))..))))))))..))))))).))))..............

Structure

--guucccuuagug    -    a   gU        AG  A        a   ua   u     cu 
              uuga caua uug  UGACGACG  AG GAGCACGc ugu  gca ucaug  g
              |||| |||| |||  ||||||||  || |||||||| |||  ||| |||||  u
              aacu guau aac  acugcugc  uc cucgugug aca  ugu gguac  g
ucguguuugcaaua    c    -   gu        ca  c        a   uc   u     ua 

Annotation confidence Not enough data

Genome context

scaffold01190: 159468-159600 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mes-MIR535d

Mature mes-miR535d

• Accession: MIMAT0045981
• Description: Manihot esculenta mes-miR535d mature miRNA
• Sequence: 26 - UUGACGACGAGAGAGAGCACG - 46
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26822616
   High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
   Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
   BMC Genomics (2016) 17:85