Stem-loop mes-MIR171d

Accession

MI0024282

Description

Manihot esculenta mes-MIR171d precursor miRNA

Literature search

8 open access papers mention mes-MIR171d
(26 sentences)

Sequence

gugauauugguucggcucgucgucuucuucuucauuuuaucaagaaauggauccuggcuaguuauggaagauccaguagaagAUGAGCCGUGCCAAUAUCACG
(((((((((((.(((((((((.(((..(((((.........))))).((((((....(((....)))..))))))..))).))))))))).))))))))))).

Structure

-           u         g   ucuucuucauuuuaucaagaaa      cugg   g 
 gugauauuggu cggcucguc ucu                      uggauc    cua u
 ||||||||||| ||||||||| |||                      ||||||    |||  
 CACUAUAACCG GCCGAGUAg aga                      accuag    ggu u
G           U         a   --------------------ug      --aa   a 

Annotation confidence Not enough data

Genome context

scaffold07330: 183574-183676 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mes-MIR171d

Mature mes-miR171d

• Accession: MIMAT0029240
• Description: Manihot esculenta mes-miR171d mature miRNA
• Sequence: 83 - AUGAGCCGUGCCAAUAUCACG - 103
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269