Stem-loop mes-MIR393a

Accession

MI0024304

Description

Manihot esculenta mes-MIR393a precursor miRNA

Literature search

4 open access papers mention mes-MIR393a
(20 sentences)

Sequence

acuauaggagacaUCCAAAGGGAUCGCAUUGAUCcuaaaacucuucucuuucauaauuuaaucucucuuuuggaucaugcuaucccuuuggauuccuccuuuggu
((((.(((((..((((((((((((.((((.(((((....................................))))))))).))))))))))))..))))).))))

Structure

    u     ac            C    U     uaaaacucuucucuuuc 
acua aggag  aUCCAAAGGGAU GCAU GAUCc                 a
|||| |||||  |||||||||||| |||| |||||                  
uggu uccuc  uagguuucccua cgua cuagg                 u
    u     cu            u    -     uuuucucucuaauuuaa 

Annotation confidence Low

Genome context

scaffold12439: 276547-276651 [-]

Mature mes-miR393a

• Accession: MIMAT0029262
• Description: Manihot esculenta mes-miR393a mature miRNA
• Sequence: 14 - UCCAAAGGGAUCGCAUUGAUC - 34
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269


2. PubMed ID: 26822616
   High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
   Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
   BMC Genomics (2016) 17:85