Stem-loop mes-MIR171a

Accession

MI0020964

Description

Manihot esculenta mes-MIR171a precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

7 open access papers mention mes-MIR171a
(24 sentences)

Sequence

ggagagaguggugcauaggugaagauauuggcgugccucaaucuaauuacaugguuaaaugauauguuuuagccaaguacuuuggaUUGAGCCGCGUCAAUAUCUCCuucaauuaauuucaccucucucucu
((((((((.((((..(((.((((((((((((((((.((((((((((.(((.((((((((........)))))))).)))..)))))))))).)))))))))))))...))).)))....)))).))))))))

Structure

        u    --ca   g   ---             c          -u   a        uga 
ggagagag ggug    uag uga   agauauuggcgug cucaaucuaa  uac ugguuaaa   u
|||||||| ||||    ||| |||   ||||||||||||| ||||||||||  ||| ||||||||    
ucucucuc ccac    auu acu   UCUAUAACUGCGC GAGUUagguu  aug accgauuu   a
        u    uuua   a   uCC             C          uc   a        ugu 

Annotation confidence Not enough data

Genome context

scaffold05214: 128472-128603 [-]

Mature mes-miR171a

• Accession: MIMAT0024415
• Description: Manihot esculenta mes-miR171a mature miRNA
• Sequence: 87 - UUGAGCCGCGUCAAUAUCUCC - 107
• Evidence: experimental ; Illumina [2]

References

1. Overview of the potential of microRNAs and their target gene detection for cassava (Manihot esculenta) improvement
   "Amiteye S, Corral JM, Sharbel TF"
   African J Biotech. (2011) 10:2562-2573


2. PubMed ID: 26822616
   High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
   Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
   BMC Genomics (2016) 17:85