miRBase entry: rno-mir-3068

Stem-loop rno-mir-3068


Accession
MI0021534
Description
Rattus norvegicus rno-mir-3068 precursor miRNA
Gene family
MIPF0001596; mir-3068

Literature search
2 open access papers mention rno-mir-3068
(8 sentences)

Sequence

116191 reads, 159 reads per million, 493 experiments
aagaguaaUUGGAGUUCAUGCAAGUUCUAACCAguuuaaccaguagcugGGUGAAUUGCAGUACUCCAACAuucug
.(((((..(((((((...(((((.(((...((((((........))))))..))))))))..))))))).))))).

Structure
a     aa       UCA     G   UAA      uaa 
 agagu  UUGGAGU   UGCAA UUC   CCAguu   c
 |||||  |||||||   ||||| |||   ||||||    
 ucuuA  AACCUCA   ACGUU AAG   Ggucga   c
g     -C       -UG     -   -UG      uga 


Annotation confidence High
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Genome context
chr6: 111468732-111468807 [-]

Database links

Mature rno-miR-3068-5p

Accession MIMAT0024845
Description Rattus norvegicus rno-miR-3068-5p mature miRNA
Sequence 9 - UUGGAGUUCAUGCAAGUUCUAACCA - 33
Evidence experimental
Illumina [1-2]

Mature rno-miR-3068-3p

Accession MIMAT0024846
Description Rattus norvegicus rno-miR-3068-3p mature miRNA
Sequence 50 - GGUGAAUUGCAGUACUCCAACA - 71
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 22470567
    Discovery of novel microRNAs in rat kidney using next generation sequencing and microarray validation
    Meng F, Hackenberg M, Li Z, Yan J, Chen T
    PLoS One (2012) 7:e34394

  2. PubMed ID: 22605339
    Limonoid compounds inhibit sphingomyelin biosynthesis by preventing CERT protein-dependent extraction of ceramides from the endoplasmic reticulum
    "Hullin-Matsuda F, Tomishige N, Sakai S, Ishitsuka R, Ishii K, Makino A, Greimel P, Abe M, Laviad EL, Lagarde M, Vidal H, Saito T, Osada H, Hanada K, Futerman AH, Kobayashi T"
    "J Biol Chem (2012) 287:24397-24411

  3. PubMed ID: 22908386
    MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase
    "Clokie SJ, Lau P, Kim HH, Coon SL, Klein DC"
    "J Biol Chem (2012) 287:25312-25324